PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008243989.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 188aa    MW: 21107.4 Da    PI: 7.8476
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008243989.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.23.9e-105494954
                    HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     r RR+ri ++f  L++l+P       +K++ +++Le+A++Y+k L
  XP_008243989.1 54 ARERRHRISDRFKILQSLVPGG-----TKMDTVSMLEEAIHYVKFL 94
                    699*****************87.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.3834594IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-1350104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.19E-135198No hitNo description
SMARTSM003539.6E-1351100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.3E-125198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-75494IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MDYFSATNNC SSDGSNSNSS SATKQNGTGE KIKGGVKSKS KGVRLSTDPQ SVAARERRHR  60
ISDRFKILQS LVPGGTKMDT VSMLEEAIHY VKFLKAQIWL HQSMINFVDD DDRLPHDRSS  120
SSSSSSMFQY QLPADHHLHH PTGSHDFYSQ NNFVQPPSPS MNIPLPDPNY FQGQEAMPNI  180
EAYMKYYS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008243989.11e-140PREDICTED: transcription factor LAX PANICLE-like
TrEMBLM5W2M51e-95M5W2M5_PRUPE; Uncharacterized protein
STRINGPOPTR_0006s10350.13e-42(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71672846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01310.14e-33APRATAXIN-like